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  • Tutorials
    • Split donors / regions based on shapes from xenium explorer
    • Xenium tutorial
  • API
    • Input/Output
    • Preprocessing
      • sparty.pp.run_scanpy
      • sparty.pp.subsetSamples
      • sparty.pp.metrics_summary
    • Tools
    • Plotting
      • sparty.pl.plot_qc
      • sparty.pl.plot_sdata
      • sparty.pl.plot_multi_sdata
      • sparty.pl.plot_shape_along_axis
      • sparty.pl.plot_per_groups
      • sparty.pl.scis_prop
  • Changelog
  • Contributing guide
  • References

Index

A | C | L | M | P | R | S | U

A

  • alpha_shape_optimal() (in module sparty.tl)

C

  • centerline() (in module sparty.tl)

L

  • load_cosmx() (in module sparty.io)
  • load_merscope() (in module sparty.io)
  • load_xenium() (in module sparty.io)

M

  • metrics_summary() (in module sparty.pp)
  • module
    • sparty.io

P

  • plot_multi_sdata() (in module sparty.pl)
  • plot_per_groups() (in module sparty.pl)
  • plot_qc() (in module sparty.pl)
  • plot_sdata() (in module sparty.pl)
  • plot_shape_along_axis() (in module sparty.pl)
  • pseudobulk() (in module sparty.tl)

R

  • run_scanpy() (in module sparty.pp)

S

  • scis_prop() (in module sparty.pl)
  • shapes_from_xe() (in module sparty.io)
  • sparty.io
    • module
  • subsetSamples() (in module sparty.pp)

U

  • unassigned_RNA() (in module sparty.tl)

By kevin lebrigand

© Copyright 2026, kevin lebrigand..