sparty.pp.subsetSamples

sparty.pp.subsetSamples(sdata, sample, regions, manip, fov_locations, scale_factor=0.2125, region='cell_boundaries', techno='Xenium')

Subset SpatialData object based on specified regions and sample.

Parameters:

• sdata (SpatialData) – SpatialData object.

• sample (str) – Sample identifier.

• regions (list) – List of regions to subset.

• manip (dict) – Dictionary containing manipulation metadata.

• fov_locations (DataFrame) – DataFrame containing field of view locations.

• scale_factor (float (default: 0.2125)) – Scale factor to convert pixel dimensions to microns.

• region (str (default: 'cell_boundaries')) – Region key in SpatialData object.

• techno (str (default: 'Xenium')) – Technology type (e.g., ‘Xenium’).

Return type:

SpatialData

Returns:

sd.SpatialData Subsetted SpatialData object.