sparty.pl.scis_prop

sparty.pl.scis_prop(adata, sample_col='sample', condition_col='condition', group_col='cell_type', group_only=None, group_top=None, strip_hue_col=None, palette_box=None, palette_strip=None, condition_order=None, stat_test='t-test_ind', ncols=4, sub_figsize=(5, 5), hspace=0.5, wspace=0.5, save=None, rotate=0, bbox_to_anchor=(0.98, 0.5))

Compute per zone celltype proportion between 2 conditions using replicate for statistical testing

Parameters:

• adata (AnnData) – AnnData object.

• group_by – group

• group_only (str | list (default: None)) – just plot this group

• split_by – x value split_by

• split_only – focus on this split_by

• split_by_top – top split_by to consider

• replicate – replicate key in adata.obs

• condition – condition key in adata.obs

• condition_order (list (default: None)) – tuple of the x conditions to test

• figsize – figure size

Returns: