Preprocessing

run_scanpy(sdata[, resolution, layer, key, ...])	Run Scanpy normalization, dimensionality reduction, clustering, and plotting.
subsetSamples(sdata, sample, regions, manip, ...)	Subset SpatialData object based on specified regions and sample.
metrics_summary(sdata[, scale_factor, ...])	Generate a summary of metrics for a SpatialData object that come from the Xenium technology.