sparty.pp.metrics_summary

sparty.pp.metrics_summary(sdata, scale_factor=0.2125, table_key='table', transcripts_key='transcripts', image_key='morphology_focus')

Generate a summary of metrics for a SpatialData object that come from the Xenium technology.

Parameters:

• sdata (SpatialData) – SpatialData object.

• scale_factor (float (default: 0.2125)) – Scale factor to convert pixel dimensions to microns.

Return type:

dict

Returns:

dict Dictionary containing various summary metrics.