Plotting

Plotting#

pl.plot_qc(sdata)

Plot quality control analysis.

pl.plot_sdata(sdata[, color_key, ...])

Plot sdata object (i.e. embedding and polygons).

pl.plot_multi_sdata(sdata[, color_key, save])

Plot sdata object (i.e. embedding and polygons).

pl.plot_shape_along_axis(sdata[, group_lst, ...])

Analyse cell types occurence and gene expression along x axis of a sdata polygon shape after an evenual rotation

pl.plot_per_groups(adata, clust_key[, size, ...])

Plot UMAP splitted by clust_key

pl.scis_prop(adata[, sample_col, ...])

Compute per zone celltype proportion between 2 conditions using replicate for statistical testing